{"id":10929,"date":"2019-04-01T01:05:03","date_gmt":"2019-04-01T08:05:03","guid":{"rendered":"https:\/\/wp.pugetsystems.com\/featured\/case-study-with-argonne-national-laboratory-224\/"},"modified":"2024-05-30T11:41:42","modified_gmt":"2024-05-30T18:41:42","slug":"case-study-with-argonne-national-laboratory-224","status":"publish","type":"case_study","link":"https:\/\/www.pugetsystems.com\/featured\/case-study-with-argonne-national-laboratory-224\/","title":{"rendered":"Case Study with Argonne National Laboratory"},"content":{"rendered":"<h2 class=\"wp-block-heading\" id=\"AboutArgonneNationalLaboratory\">About Argonne National Laboratory<\/h2>\n<p>Kirill Prozument is an Assistant Chemist at the Chemical Sciences and Engineering Division of <a href=\"https:\/\/www.anl.gov\/\">Argonne National Laboratory<\/a>. His primary area of scientific interests is fundamental chemical reaction dynamics.<\/p>\r\n\r\n<p style=\"text-align: center;\"><a href=\"https:\/\/www.pugetsystems.com\/pic_disp.php?id=54288&amp;width=800&amp;height=800\" rel=\"article_pics noopener\" target=\"_blank\"><img decoding=\"async\" class=\"img-responsive\" src=\"https:\/\/www.pugetsystems.com\/pic_disp.php?id=54288&amp;width=650\" style=\"margin:0 auto;\" title=\"\" \/><\/a><\/p>\r\n\r\n<h5 style=\"text-align: center;\"><meta charset=\"utf-8\"><span id=\"docs-internal-guid-a2d6f6b1-7fff-6b00-6210-e8a3b25b3ed7\" style=\"font-size:10pt;font-family:'Times New Roman';color:#000000;background-color:transparent;font-weight:700;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline;white-space:pre;white-space:pre-wrap;\">The concept of using artificial neural networks (middle) to convert rotational spectra (left) to molecular parameters (right). The Figure is reproduced from <\/span><a href=\"https:\/\/doi.org\/10.1063\/1.5055765\" style=\"text-decoration:none;\"><span style=\"font-size:10pt;font-family:'Times New Roman';color:#0000ff;background-color:transparent;font-weight:700;font-style:normal;font-variant:normal;text-decoration:underline;-webkit-text-decoration-skip:none;text-decoration-skip-ink:none;vertical-align:baseline;white-space:pre;white-space:pre-wrap;\">AIP Scilight<\/span><\/a><span style=\"font-size:10pt;font-family:'Times New Roman';color:#000000;background-color:transparent;font-weight:700;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline;white-space:pre;white-space:pre-wrap;\">, with the permission of AIP Publishing. <\/span><\/h5>\r\n\r\n<h5 style=\"text-align: center;\">&nbsp;<\/h5>\r\n\r\n<p><meta charset=\"utf-8\"><\/p>\r\n\r\n<p>In his <a href=\"https:\/\/www.anl.gov\/profile\/kirill-prozument\">laboratory<\/a>, they use broadband chirped-pulse rotational spectroscopy to investigate chemical reactivity in the gas phase. With the advent of broadband rotational spectroscopy, automation of data analysis and, in particular, the assignment of rotational spectra became a necessity. Kirill and his team decided to approach the problem using artificial neural networks.<br \/>\r\n<br \/>\r\nDaniel Zaleski, who is now Assistant Professor at Colgate University, was the lead researcher working with Kirill on this project. Daniel did this work while being a postdoctoral researcher at Argonne.<\/p>\r\n<h2 class=\"wp-block-heading\" id=\"ToolsoftheTrade\">Tools of the Trade<\/h2>\n<p>While a standard PC was sufficient while using the feed forward artificial neural network, which operates with frequencies of rotational transitions, training a convolutional neural network on images of spectra required a customized PC. The need for Kirill&#39;s team to fully customize their workstation for neural network work is one reason he enlisted the help of Puget Systems.<\/p>\r\n\r\n<p>Kirill outfitted his workstation with NVIDIA GeForce GTX 1080 Ti GPU. This powerful GPU is used to train the convolutional neural network which is part of a Rotational Assignment and Identification Network (RAINet).<\/p>\r\n\r\n<p>Training a convolutional neural network on images of spectra required a custom PC.<\/p>\r\n\r\n<p><a href=\"https:\/\/www.pugetsystems.com\/pic_disp.php?id=55230&amp;width=800&amp;height=800\" rel=\"article_pics noopener\" target=\"_blank\"><img decoding=\"async\" class=\"img-responsive\" src=\"https:\/\/www.pugetsystems.com\/pic_disp.php?id=55230&amp;width=350\" style=\"margin:0 auto;\" \/><\/a><\/p>\r\n\r\n<p><span id=\"docs-internal-guid-a0183d23-7fff-5bc7-1f22-30e1c76f7731\" style=\"font-size:10pt;font-family:'Times New Roman';color:#000000;background-color:transparent;font-weight:700;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline;white-space:pre;white-space:pre-wrap;\">An image of a rotational spectrum of a symmetric top molecule (left). A heat map representing the confidence level of the convolutional neural network that a certain pixel of the image belongs to a rotational line (right). The Figures are reproduced from the <\/span><a href=\"https:\/\/doi.org\/10.1063\/1.5037715\" style=\"text-decoration:none;\"><span style=\"font-size:10pt;font-family:'Times New Roman';color:#0000ff;background-color:transparent;font-weight:400;font-style:italic;font-variant:normal;text-decoration:underline;-webkit-text-decoration-skip:none;text-decoration-skip-ink:none;vertical-align:baseline;white-space:pre;white-space:pre-wrap;\">Journal of Chemical Physics<\/span><span style=\"font-size:10pt;font-family:'Times New Roman';color:#0000ff;background-color:transparent;font-weight:400;font-style:normal;font-variant:normal;text-decoration:underline;-webkit-text-decoration-skip:none;text-decoration-skip-ink:none;vertical-align:baseline;white-space:pre;white-space:pre-wrap;\">, 149, 104106 (2018)<\/span><\/a><span style=\"font-size:10pt;font-family:'Times New Roman';color:#000000;background-color:transparent;font-weight:700;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline;white-space:pre;white-space:pre-wrap;\">, with the permission of AIP Publishing.<\/span><span style=\"font-size:10pt;font-family:'Times New Roman';color:#000000;background-color:transparent;font-weight:700;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline;white-space:pre;white-space:pre-wrap;\">&nbsp;&nbsp;&nbsp; <\/span><span style=\"font-size:10pt;font-family:'Times New Roman';color:#000000;background-color:transparent;font-weight:700;font-style:normal;font-variant:normal;text-decoration:none;vertical-align:baseline;white-space:pre;white-space:pre-wrap;\"> <\/span><\/p>\r\n<h2 class=\"wp-block-heading\" id=\"WhyArgonneChosePugetSystems\">Why Argonne Chose Puget Systems<\/h2>\n<p>The research Kirill and his team were performing required more horsepower than a standard, off-the-shelf PC could offer. Not only was the GPU important to his work, but he also needed lots of RAM and a high-performance SSD.<br \/>\r\n<br \/>\r\nKirill worked with Puget Systems consultants to come up with a workstation that is optimized to take advantage of the neural networks his research requires.<br \/>\r\n<br \/>\r\nThe work is published in the <a href=\"https:\/\/doi.org\/10.1063\/1.5037715\">Journal of Chemical Physics, 149, 104106 (2018)<\/a>.<\/p>\r\n\r\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\r\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\"><!-- matchHeight called via custom-javascript.js file -->\n\n<div class=\"post-cta card\">\n\t<img decoding=\"async\" src=\"https:\/\/www.pugetsystems.com\/pic_disp.php?id=51090&#038;height=150\" alt=\"CTA Image\" class=\"img-responsive mx-auto cta-image\">\t<div class=\"card-body\">\n\t\t<span class=\"h4\" data-mh=\"title\" style=\"display: block\">Engineering Workstations<\/span> \n\t\t<div class=\"card-text\"><span data-mh=\"summary\"><p>Puget Systems offers a range of powerful and reliable systems that are tailor-made for your unique workflow.<\/p>\n<\/span><\/div>\n        \t\t<a href=\"https:\/\/www.pugetsystems.com\/solutions\/engineering\/index.php\" class=\"post-cta-link btn btn-primary\" data-mh=\"button\">Configure a System!<\/a><!--EB added data-mh=\"button\"--> \n        \t<\/div>\n<\/div>\n<\/div>\r\n\r\n\r\n\r\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\"><!-- matchHeight called via custom-javascript.js file -->\n\n<div class=\"post-cta card\">\n\t<img decoding=\"async\" src=\"https:\/\/www.pugetsystems.com\/pic_disp.php?id=61859&#038;height=150\" alt=\"CTA Image\" class=\"img-responsive mx-auto cta-image\">\t<div class=\"card-body\">\n\t\t<span class=\"h4\" data-mh=\"title\" style=\"display: block\">Labs Consultation Service<\/span> \n\t\t<div class=\"card-text\"><span data-mh=\"summary\"><p>Our Labs team is available to provide in-depth hardware recommendations based on your workflow.<\/p>\n<\/span><\/div>\n                    <!--HubSpot Call-to-Action Code -->\n            <span class=\"hs-cta-wrapper\" id=\"hs-cta-wrapper-9d9b08c3-07e9-4516-90f7-87e13aea3ad9\">\n\t\t\t\t<span class=\"hs-cta-node hs-cta-9d9b08c3-07e9-4516-90f7-87e13aea3ad9\" id=\"hs-cta-9d9b08c3-07e9-4516-90f7-87e13aea3ad9\">\n\t\t\t\t\t<!--[if lte IE 8]><div id=\"hs-cta-ie-element\"><\/div><![endif]-->\n                    <a href=\"https:\/\/cta-redirect.hubspot.com\/cta\/redirect\/4867918\/9d9b08c3-07e9-4516-90f7-87e13aea3ad9\">\n\t\t\t\t\t\t<img decoding=\"async\" class=\"hs-cta-img\" id=\"hs-cta-img-9d9b08c3-07e9-4516-90f7-87e13aea3ad9\" style=\"border-width:0px;\" src=\"https:\/\/no-cache.hubspot.com\/cta\/default\/4867918\/9d9b08c3-07e9-4516-90f7-87e13aea3ad9.png\" alt=\"Find Out More!\"\/>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/span>\n\t\t\t\t<script charset=\"utf-8\" src=\"https:\/\/js.hscta.net\/cta\/current.js\"><\/script>\n\t\t\t\t<script type=\"text\/javascript\"> hbspt.cta.load(4867918, '9d9b08c3-07e9-4516-90f7-87e13aea3ad9', {}); <\/script>\n\t\t\t<\/span>\n            <!-- end HubSpot Call-to-Action Code -->\n        \t<\/div>\n<\/div>\n<\/div>\r\n<\/div>\r\n","protected":false},"excerpt":{"rendered":"<p>Argonne chemists use artificial neural networks to read molecular spectra. They enlisted the help of Puget Systems to build them a workstation that could be used to train convolutional neural networks. <\/p>\n","protected":false},"author":142,"featured_media":10928,"menu_order":0,"template":"","meta":{"_acf_changed":false,"content-type":"","classic-editor-remember":"","legacy_id":"224","redirect_url":[],"expire_date":"","alert_message":"","alert_link":[],"configure_ids":"","system_grid_title":"","system_grid_ids":""},"case_study_categories":[],"case_study_tags":[9304],"coauthors":[9026],"class_list":["post-10929","case_study","type-case_study","status-publish","has-post-thumbnail","hentry","case_study_tag-hpc"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v26.7 (Yoast SEO v26.7) - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Case Study with Argonne National Laboratory | Puget Systems<\/title>\n<meta name=\"description\" content=\"Argonne chemists use artificial neural networks to read molecular spectra. 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